MmuEX6016074 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20795607-20797519:+
Coord C1 exon
chr5:20795607-20795708
Coord A exon
chr5:20795863-20795962
Coord C2 exon
chr5:20796356-20797519
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGGAGTGTTTTCCCTTTTAGCCT
3' ss Score
6.48
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CTTATTGGCCAGAAGGTCTGCCGGCTTTGGGACCACCCCATGAGTTCCAATATCATTTCACGGAACCATGTGGCCCGGCTGCTGAAAAACTACAGGAAAGAG
Seq A exon
CCTCGGAACTCCATGATTGACAAATCATCATTTCCGGTAGAATTTCTGCCTCTGAACTACTTCATCGAAATTCTGATGGGCCTGGAGTCCTCCAACCAAG
Seq C2 exon
CACTGTATGGCTTTGAAGGACATGACAATGTGGACGCAGAATTTGTAGAGGAAGCTGCTCTGAAACACACCACCATGCTTTTGGGCTTATGAAAGTGGACGTGCAGACGGACGATTTCAATATTTTCACCTCCCTTTTCTGGAAACTTTCCCACTGTCTTTAAGATTGGGAACAGGTCAGAATATACTGCAGAGCTGTTGGCTTCGGTACAGTTCTTATTCCGAGGCAGCTGCTCCTTCTCTCAGTTCAAGCAGCCAGTAAACAGCCAAGAGGAAAGAACAAGTTCAAGGCCGTGTGCTGCGGCAGGAACAGTGCCCTCCTTGGTGGCCCAGTAGGCCTGGAGCTGGTTCTGTTGCACTAAAGAATCTAATACAAACACAGGGGACAATGCCTAGAACAGTGAGAGCCAGGCGGTCACTGGAAAGGACATAGGACAGGCAGGAAAGGTCAGTGCTGGGAAGAGCATCTCAGGAGAACCTGAAACTGAGGAAGCAAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF056127=DUF781=FE(37.1=100)
A:
PF056127=DUF781=PD(13.5=35.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCTGCTGAAAAACTACA
R:
AACTGTACCGAAGCCAACAGC
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: