DreEX6002498 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20477120-20478133:-
Coord C1 exon
chr4:20478029-20478133
Coord A exon
chr4:20477521-20477617
Coord C2 exon
chr4:20477120-20477419
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACACGTGATCTTTTTTTTAGGAC
3' ss Score
10.19
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CATATAGATAAGAAAGTGAGCCAACGGTGGGATCATCCCATAACCTCTGCAAGCATCTCCAGAGAATACATCGGGTCATTGCTGGACAAACACTCAGAGAGCAAG
Seq A exon
GACTCTGCACTTTTGGACTACAGCAAGTCAAGTTTCTATCCTGATTTTCTACCTCTGAACTACCTCGCCAAGGTTCTCTCCAATAGGGAGGAACAAG
Seq C2 exon
CTCAGAACCCTTTCGAAGAGCAGGAGAATGTAGATGTCAGATTTGTGGAAGAAACAGCCCTAAAGCAGACACTGATCAAACTGGGCTTTGAGGTCAAGTAAAAACAGCCCAGTACAAACTAAAAAAGTAGTTTAAAGGGAAACTTTGAGGAAAAATTATAGAGGAAACGCACTCACCTAAGAACAAAGCTTAGGTTCGTTTAGGTGACTTTAATAATGTACAGAAATGTATGGGTGTCATACTAAAAACTGAAGCCCAAAATCATGCTGTTGACCAAAAATAATACCTTTGCTATCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGAGCCAACGGTGGGAT
R:
CAGTGTCTGCTTTAGGGCTGT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]