BtaEX6026933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44098795-44111880:+
Coord C1 exon
chr4:44098795-44099012
Coord A exon
chr4:44111207-44111276
Coord C2 exon
chr4:44111798-44111880
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTTACTTTTTAAAGATT
3' ss Score
7.47
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
AAAACAGTGAAGTGATTGACATGCTACCTCATAGTCCTTTACAGTCACTGTCAGGGTCTCTGGTCCTGGATTCACGTTCTGGAAAGCTCTACAGGGTGCTCCTCAACCAGTCGTATTTAGTGGAGTTCCTGCGGAGCGCCCGGCTGGACTGTGAGAGGATGGCCTTGCTTCACTGTGCACTCTCGCATGGCCGAGACCCACGGCGACTGGAAGCCAAG
Seq A exon
ATTATTCAGTGGATTTCTGAGAACATCTCTGCCTGCCATTCATTTGACCTCATTCAGGAATTTATAATTG
Seq C2 exon
CTTCTTCATATTGGAGCATTTATCCAGAGACAAGTAACATGGATAAACTTTTGCCGTATTCCTCACTGCTCACTTGGGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430-'19-20,'19-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGTGGAGTTCCTGCGGAG
R:
TCCCAAGTGAGCAGTGAGGAA
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]