DreEX0036388 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20492009-20492904:-
Coord C1 exon
chr4:20492684-20492904
Coord A exon
chr4:20492506-20492575
Coord C2 exon
chr4:20492009-20492088
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTCCATCTTTTTAGATT
3' ss Score
10.13
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGGCGGATGGTCATATTGAAGCACTGTGTTCGGGCAGAGCGGTTGTGAGTGTGTCTGGCAACCGGCTGCTTGATGTCCAAGCTGGCAGGATATACAACATGGATCTCAACCCAGACTTCCTGCTTGAGCTTCTGAGTTCAGGCAGACCTGAAGCCCAGCAGCTGGCGGCTCTGCACTGCATGCTGGTTTACCTGCAGCCAAATCCTGTGCTAGAGCTCAAG
Seq A exon
ATTATAAACTGGATCAGTGAGAACGTCATGAGCTTTGATGCTTTTGATCAGATTCAGGAATTTATTCTAG
Seq C2 exon
CCTCCTTGTACAGAATAAGCTACCAGCAGTGTGTGAGCTTAGATAAGCTGTTGCCATACTCCTGTGTATTTGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTGGCAGGATATACAACA
R:
CTCACACACTGCTGGTAGCTT
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]