RnoEX0040219 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10456611-10460133:-
Coord C1 exon
chr4:10459919-10460133
Coord A exon
chr4:10457207-10457276
Coord C2 exon
chr4:10456611-10456693
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTGGCCTTTCTTTTTAAAGATC
3' ss Score
10.04
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAAACAACAAAACGGCCGCTGTGCTACCTCCGAGTCCTTTGCAGTCCCTGCCGGGGTCCCTCATTCTGGACTGCTCTTCTGGAAAGGTCTATAGAGCAACTCTTGACCAGTCATACTTGATGGGTTTCCTGTGGAACGCCCAGCTAGACTGTGAGAAAATGGCTGCGCTGCATTGTGCACTGTCCTGTGATTCAGACCCAGGTTTCCCAGAACAG
Seq A exon
ATCGTTCAGTGGGTTTCTGAGCGTGTCTCTGCCTGCCATTCATTTGACCTCATTCAAGAATTCCTAATTG
Seq C2 exon
CGTCCTCCTATTGGAGTGTGTATCCAGGGCTGGATGACGTGGACCTGCTCTTACCCTACTCCTCTGTGCTGACATGGGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'19-28,'19-27,20-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGGTTTCCTGTGGAACG
R:
GTGTCCCATGTCAGCACAGAG
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]