MmuEX6016084 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20756757-20759859:+
Coord C1 exon
chr5:20756757-20756974
Coord A exon
chr5:20759188-20759257
Coord C2 exon
chr5:20759777-20759859
Length
70 bp
Sequences
Splice sites
3' ss Seq
AGTGGCCTTTCTTTTTAAAGATT
3' ss Score
8.2
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAAACAACAAAATAGCTGCTGTGCTACCTCCAAGTCCTTTGCAGTCCCTGCCGGGGTCCCTGGTTCTGGACTGCTATTCTGGAAAGGTCTATAGAGTAACCCTTGACCAGTCATACTTGTTGCGGTTCCTATGGAACGCCCATCTCGACTGTGAGAGAATGGCTGCACTGCACTGTATACTATCCTGTAGTCAAGACCCAGGTTTCCCGGAAGAACAG
Seq A exon
ATTATCCAGTGGATTTCGGAGCATGTCTCTGCTTGCCATTCATTTGACCTCATTCAAGAATTTCTAATTG
Seq C2 exon
CTTCCTCCTATTGGAGTGTGTATGCAGAGCTGGACGACATGGGCATGCTCCTACAATACTCCTCTGTGCTGACTTGGAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTTGCGGTTCCTATGGA
R:
TCCAAGTCAGCACAGAGGAGT
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: