GgaEX6000473 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13668569-13669961:+
Coord C1 exon
chr1:13668569-13668786
Coord A exon
chr1:13669096-13669165
Coord C2 exon
chr1:13669879-13669961
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCTTTCTGACAGATT
3' ss Score
11.42
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGAGGATGCAAGAATTGACATGTTGCCAAACTGCTCCATCCAGTCCCCACTCGTGTCAACAGTCTTGGATTGCTGCATAGGAAGACTGTATGCAATGAGCATCAGTGACAGTGCCTTACTGAAGTACCTACAGAACAGCAAACGAGACAGTGAGAGGTTGGCAGCTCTACATTGTGCTCTTCTGTGTGTCAGAAGAACAACAGACTTGGAAATGAAG
Seq A exon
ATTATTTGGTGGATTTCTGAGAACCTATCAACGTGTCATTCCTTTGATCCTATTCAGGAATTTATCATTG
Seq C2 exon
CCTCTCTGTACTGCAGAATGTGTCCAGAAACCAACAACCTGGATAAACTCTTGCCCTACACATCACTGCTTGACTGGACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'16-19,'16-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCATCAGTGACAGTGCC
R:
GGGCAAGAGTTTATCCAGGTTGT
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]