BtaEX6027555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001182 | CDC10
Description
Bos taurus septin 7 (SEPT7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001168]
Coordinates
chr4:61629965-61634609:-
Coord C1 exon
chr4:61634492-61634609
Coord A exon
chr4:61631367-61631459
Coord C2 exon
chr4:61629965-61630061
Length
93 bp
Sequences
Splice sites
3' ss Seq
GACTTCCTCTTTCATCTTAGATA
3' ss Score
8.56
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCATGAAAAAGTGAATATCATTCCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAATGCCAACAGTTTAAGAAACAG
Seq A exon
ATAATGAAAGAAATCCAAGAACATAAAATTAAAATATATGAATTCCCAGAGACAGATGATGAAGAAGAAAATAAGCTTGTTAAAAAGATAAAG
Seq C2 exon
GACCGTTTACCTCTTGCTGTGGTAGGTAGTAATACTATCATTGAAGTTAATGGAAAAAGGGTCAGAGGAAGGCAGTATCCTTGGGGTGTTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001182-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=FE(14.1=100)
A:
PF0073513=Septin=FE(10.8=100)
C2:
PF0073513=Septin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCGTTTGCATGAAAAAGTGA
R:
ACTGCCTTCCTCTGACCCTTT
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]