GgaEX0018263 @ galGal3
Exon Skipping
Gene
ENSGALG00000012138 | F1NIP9_CHICK
Description
NA
Coordinates
chr2:46970023-46973403:-
Coord C1 exon
chr2:46973286-46973403
Coord A exon
chr2:46971358-46971450
Coord C2 exon
chr2:46970023-46970119
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATAATGTTTTTGGTTTTTAGATA
3' ss Score
8.8
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACTTAAGCCTTTGGATATAGAGTTTATGAAGCGCCTGCATGAAAAAGTGAATATCATTCCACTTATTGCCAAAGCAGACACACTTACACCTGAGGAATGCCAACAGTTTAAAAAACAG
Seq A exon
ATAATGAAAGAAATCCAAGAACACAAAATTAAAATATATGAATTTCCAGAAACAGATGATGAAGAAGAAAACAAGATTGTTAAAAAGATAAAG
Seq C2 exon
GACCGTTTACCTCTTGCTGTGGTAGGTAGTAATACAATCATCGAAGTCAATGGCAAGAGAGTTAGAGGAAGACAGTACCCATGGGGTGTTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012138-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=FE(14.1=100)
A:
PF0073513=Septin=FE(10.8=100)
C2:
PF0073513=Septin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGCCTGCATGAAAAAGTG
R:
CCCCATGGGTACTGTCTTCCT
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]