DreEX0065308 @ danRer10
Exon Skipping
Gene
ENSDARG00000052673 | sept7b
Description
septin 7b [Source:ZFIN;Acc:ZDB-GENE-030131-37]
Coordinates
chr16:47469405-47473111:-
Coord C1 exon
chr16:47472994-47473111
Coord A exon
chr16:47472544-47472636
Coord C2 exon
chr16:47469405-47469501
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTGTGCTTCTCTAGATC
3' ss Score
10.54
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCTGAAACCTTTGGACATCGAGTTTATGAAACGGTTGCACGAGAAGGTCAACATCATCCCACTGATCGCCAAAGCAGATACGCTGACCCCTGAAGAGTGCCAACAGTTCAAGAAACAG
Seq A exon
ATCATGCGAGAAATCCTGGAGCACAAGATCAAAATCTACGAGTTCCCCGAAACGGATGATGAGGAGGAAAACAAGATTGTGAAAACAATCAAA
Seq C2 exon
GATCGGTTGCCCCTGGCTGTGGTCGGAAGCAACACTATTATTGAGGCGAATGGCAAGAAGGTTAGAGGAAGGCAGTACCCATGGGGAGTGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052673-'8-9,'8-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(13.6=94.7)
A:
PF0073513=Septin=FE(10.8=100)
C2:
PF0073513=Septin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCACGAGAAGGTCAACA
R:
CCATGGGTACTGCCTTCCTCT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]