MmuEX1023240 @ mm10
Exon Skipping
Gene
ENSMUSG00000001833 | Sept7
Description
septin 7 [Source:MGI Symbol;Acc:MGI:1335094]
Coordinates
chr9:25293685-25297908:+
Coord C1 exon
chr9:25293685-25293802
Coord A exon
chr9:25296395-25296487
Coord C2 exon
chr9:25297812-25297908
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTCCTTCTGCTTTAGATA
3' ss Score
11.67
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACTTAAACCATTGGACATTGAGTTTATGAAACGTTTGCATGAAAAAGTGAATATCATCCCATTAATTGCCAAAGCAGACACACTTACACCAGAGGAATGCCAACAGTTTAAAAAGCAG
Seq A exon
ATAATGAAAGAAATTCAAGAACATAAAATTAAAATATATGAATTTCCAGAAACAGATGATGAAGAAGAGAATAAACTGGTTAAGAAGATAAAG
Seq C2 exon
GACCGTTTACCTCTTGCTGTGGTAGGTAGTAATACTATCATTGAAGTTAATGGCAAAAGAGTCAGAGGAAGGCAGTATCCTTGGGGTGTGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001833-'17-24,'17-20,18-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=FE(14.1=100)
A:
PF0073513=Septin=FE(10.8=100)
C2:
PF0073513=Septin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGAAAAAGTGAATATCATCCCA
R:
TTCAGCCACACCCCAAGGATA
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types