HsaEX7104665 @ hg38
Exon Skipping
Gene
ENSG00000122545 | SEPT7
Description
septin 7 [Source:HGNC Symbol;Acc:HGNC:1717]
Coordinates
chr7:35879823-35885879:+
Coord C1 exon
chr7:35879823-35879940
Coord A exon
chr7:35882484-35882576
Coord C2 exon
chr7:35885828-35885879
Length
93 bp
Sequences
Splice sites
3' ss Seq
GACTACTTCTTCCATTTTAGATA
3' ss Score
9.77
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCATGAAAAAGTGAATATCATCCCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAATGCCAACAGTTTAAAAAACAG
Seq A exon
ATAATGAAAGAAATCCAAGAACATAAAATTAAAATATACGAATTTCCAGAAACAGATGATGAAGAAGAAAATAAACTTGTTAAAAAGATAAAG
Seq C2 exon
TTGAAAATGGTGAACATTGTGATTTTACAATCCTAAGAAATATGTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122545-'45-50,'45-42,49-50=AN
Average complexity
A_C1
Mappability confidence:
100%=80=90%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=FE(14.1=100)
A:
PF0073513=Septin=FE(10.8=100)
C2:
PF0073513=Septin=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGGATATTGAGTTTATGAAGCG
R:
GGATTGTAAAATCACAATGTTCACCA
Band lengths:
144-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains