DreEX6101414 @ danRer10
Exon Skipping
Gene
ENSDARG00000102889 | sept15
Description
septin 15 [Source:ZFIN;Acc:ZDB-GENE-061103-265]
Coordinates
chr25:12768487-12770407:-
Coord C1 exon
chr25:12770290-12770407
Coord A exon
chr25:12770114-12770206
Coord C2 exon
chr25:12768487-12768583
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCTTACTCTGCTCATTAGATT
3' ss Score
5.68
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
ACTGAAGCCTCTTGATATCGAGTTCATGAAGCGTCTGCATGATAAAGTCAATGTGATTCCTCTGATCGCCAAGGCAGATACACTGACGCCAGAAGAGTGTCAGCTCTTCAAGAAACAG
Seq A exon
ATTATGAAGGAGATCCAGGAACACAAAATCAAGATCTACGAGTTTCCAGACACGGAGGACGACGAGGACAGCAAACTGATCCGCAAGATAAAG
Seq C2 exon
GAGAAGATGCCTCTGGCTGTGGTGGGCAGTAATGTGGTGATTGAAGTCAATGGCAGGAAGGTCAGAGGACGTCAGTACCCCTGGGGTGTGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102889-'11-13,'11-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=FE(20.1=100)
A:
PF0073513=Septin=FE(10.8=100)
C2:
PF0073513=Septin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTCATGAAGCGTCTGC
R:
CTGACGTCCTCTGACCTTCCT
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]