BtaEX6027816 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71479675-71486730:+
Coord C1 exon
chr4:71479675-71479819
Coord A exon
chr4:71484775-71484901
Coord C2 exon
chr4:71486569-71486730
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACGATCTCTCTTTCTTTTAGATC
3' ss Score
11.61
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCGAAATACTGGAGCACTAACGCCCATGAGATTGAAGGTACAGTGTTTGACCAGAGTGGAAAAGCAGTACATCGGCTCTTCGGGAAATGGCACGAGAGCATCTACTGTGGCGGCTCCTCCTCATCCGCTTGCATCTGGAGAGCAA
Seq A exon
ATCCCATGCCAAAAGGCTATGAGCAATATTATGGCTTCACACAGTTTGCACTAGAATTAAATGAAATGGATCCATTGTTAAAGTCTTTATTACCACCTACCGATACTCGATTCAGGCCAGATCAAAG
Seq C2 exon
GTTTCTAGAAGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAGCTGCAGAGAGAAAGGCGGCGGGTCTTGGAAGAAAATAAGGTGGAGCACCAGCCGAGGTTTTTCAGGTGTGTAAATGGTGGGGTCCTACGGGTCATTGTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342-'26-34,'26-33,27-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.073
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
PF0123713=Oxysterol_BP=FE(12.0=100)
C2:
PF0123713=Oxysterol_BP=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCCCATGAGATTGAAGGT
R:
ACACCTGAAAAACCTCGGCTG
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]