DreEX0052765 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21598725-21611449:+
Coord C1 exon
chr16:21598725-21598869
Coord A exon
chr16:21601308-21601434
Coord C2 exon
chr16:21611327-21611449
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGTATGTTTATCTGTACAGATC
3' ss Score
8.54
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCAAAATACTGGAACTCCAGTATGAATGAGGTGGAGGGATCGGTCACAGACCACAAAGGCAAAGTCGTGCACAAGCTGTTCGGGAAATGGCATGAGGGCATGTACTGCGGCAGTCCACCCTCTGCTACCTGCATCTGGAGGACAA
Seq A exon
ATCCCATGCCTCCTGAATTTGAGCAGTACTACGGTTTTACAAAGTTTGCTATGGAGCTCAATGAGCTCGACCCTCTTACCAAACCACTTCTTCCACCCACAGACACCAGACTACGACCTGATCAGAG
Seq C2 exon
GTTACTAGAAGAAGGCAATGTTCAATCTGCAGAGGTGCAGAAGCAGAGGATTGAACAGCTCCAGCGAGAACGACGCAAAGTCTTGGAGGAAAACCACATGACACATCAACCTCGATTCTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'23-24,'23-23,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.349 C2=0.786
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.9=100)
A:
PF0123713=Oxysterol_BP=FE(12.1=100)
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTATGAATGAGGTGGAGGG
R:
CGAGGTTGATGTGTCATGTGGT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]