RnoEX6013593 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80031721-80035779:-
Coord C1 exon
chr4:80035635-80035779
Coord A exon
chr4:80033721-80033847
Coord C2 exon
chr4:80031721-80031843
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTATTTCTCTTTCAGATC
3' ss Score
11.33
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCAAAATACTGGAGCACTAATGCCCATGAGATCGAAGGCACGGTATTCGACCGCAGTGGGAAGGCTGTGCACCGGCTGTTTGGAAAATGGCATGAGAGCATCTACTGTGGCGGTGCCTCCTCCTCCACGTGTGTCTGGAGAGCAA
Seq A exon
ATCCCATGCCGAAAGGCTATGAGCAGTATTATGGCTTCACACAGTTTGCATTAGAGTTAAATGAAATGGATCCTTTGTCAAGGTCTTTATTACCACCCACCGACACTCGTTTTAGACCAGATCAAAG
Seq C2 exon
GCTTCTAGAAGAAGGAAACATAGAGGAGGCTGAGGTGCAGAAGCAGAGGATTGAGAAGCTGCAGAGGGAGAGGCGGAGGGTCCTGGAGGAAAACGGTGTGGAGCACCAGCCCCGGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'33-39,'33-38,35-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.116 C2=0.214
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.9=100)
A:
PF0123713=Oxysterol_BP=FE(12.1=100)
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCCATGAGATCGAAGGC
R:
CTGAAAAACCGGGGCTGGTG
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]