GgaEX6019268 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31577815-31579353:-
Coord C1 exon
chr2:31579209-31579353
Coord A exon
chr2:31578499-31578625
Coord C2 exon
chr2:31577815-31577937
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTTTTCTGCTGTAGATC
3' ss Score
11.26
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAAAGTATTGGAATCCAAATGCACATGAGATCGAAGGCAGTGTCATGGATAAAACTGGGAATGTTGTGCATCGACTCTTTGGGAAGTGGCATGAAAGTTTGTACTGTGGGACAACTTCATCTTCAAAATGCATATGGAGAGCAA
Seq A exon
ATCCAATGCCTAAAGATTATGAACAGTGGTATGGATTTACTCAGTTCGCATTGGAGTTAAATGAACTGGACCTGCAAACGAGGTCATTGCTCCCATCCACCGACACACGCTTTAGACCAGACCAAAG
Seq C2 exon
GTTTCTTGAAGAAGGAAATATTGAAGCAGCTGAAATGCAAAAACAGAGAATTGAGCAGCTACAGAGAGAACGACGGAAGGTGCTGGAAGAAAACAATCTAGAGCATCAGCCTAGATTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'26-38,'26-36,27-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.274
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.9=100)
A:
PF0123713=Oxysterol_BP=FE(12.1=100)
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATGAGATCGAAGGCAGT
R:
TGAAAAATCTAGGCTGATGCTCT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]