HsaEX0044910 @ hg19
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24843934-24849570:-
Coord C1 exon
chr7:24849426-24849570
Coord A exon
chr7:24846395-24846521
Coord C2 exon
chr7:24843934-24844056
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGATTTATTTTCTTCTTAGATC
3' ss Score
8.58
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCAAAATACTGGAGCACTAATGCCCATGAGATTGAAGGCACAGTGTTTGACAGGAGTGGAAAAGCGGTTCATCGGCTGTTTGGGAAATGGCATGAAAGCATCTACTGTGGCGGCGGCTCCTCTTCTGCCTGTGTATGGAGAGCAA
Seq A exon
ATCCTATGCCGAAAGGCTACGAGCAATACTATAGCTTCACACAGTTTGCGCTGGAATTAAATGAAATGGATCCATCATCAAAGTCTTTATTGCCACCTACTGACACTCGATTTAGGCCAGACCAGAG
Seq C2 exon
GTTTCTAGAGGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAACTGCAGAGAGAAAGGCGGCGGGTCTTAGAAGAAAATCATGTGGAGCACCAGCCTCGGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.186 C2=0.190
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.9=100)
A:
PF0123713=Oxysterol_BP=FE(12.1=100)
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATGAGATTGAAGGCACA
R:
GAAAAACCGAGGCTGGTGCTC
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)