BtaEX6027825 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71421655-71423521:+
Coord C1 exon
chr4:71421655-71421778
Coord A exon
chr4:71423122-71423225
Coord C2 exon
chr4:71423429-71423521
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTTTTCCCCCTGCAGACC
3' ss Score
12.45
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CGTAGCAGTATATCAAAGCAGAATTCGTTTCAAACCGGAAGCAATTTATCATTTTCTTGTGGTGGTGAGACTCGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
Seq A exon
ACCTGGCACACTGTCATGCCTACCTGGTGGAGATGAGCCAGCTTCTGCAAAATATGGACATCCTGCATCGGACATATTCGGCACCAGCTATCAATGCCATCCAG
Seq C2 exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAAAGATCACACAGGAGGTGGCGGTCCAGAGCTCTTGGCAAAGACGCTAAAGGAACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342-'8-15,'8-14,10-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTATATCAAAGCAGAATTCGT
R:
GCAGCGTTCCTTTAGCGTCTT
Band lengths:
212-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]