GgaEX7001894 @ galGal4
Exon Skipping
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31807918-31809125:-
Coord C1 exon
chr2:31808999-31809125
Coord A exon
chr2:31808150-31808253
Coord C2 exon
chr2:31807918-31808010
Length
104 bp
Sequences
Splice sites
3' ss Seq
TATTCTCTTGTTCAAAGCAGATC
3' ss Score
5.5
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCAGGAAGCTTGACCAAACAGAACTCTCTGTCAGCTGGTGGTAACTTGTCGTTTTCCTTTTCGAGTAATGAGTCCAGGATTCCATCTTGGCTACAGTCCTCTGAAGACATGGAAAAATGCTCAAGAG
Seq A exon
ATCTCTCCACTTGTCATGCATATTTACTGGAAATGAACCAGCTGTTACAGAGCATGGATGTTCTTCACAGGACCTGTTCAGCACCTGCTATAAATGCTATGCAG
Seq C2 exon
GTTGGACCTTTTGAAAGCCCAAAGAAGGAAAAGCGAGCACATAGGAGGTGGCGATCTAGAGTTGTTGGGAAAGAGGCTAAAGGAACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.021 C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGCTTGACCAAACAG
R:
GTAATGTTCCTTTAGCCTCTTTCCCA
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]