RnoEX0062502 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80081267-80084673:-
Coord C1 exon
chr4:80084550-80084673
Coord A exon
chr4:80081555-80081658
Coord C2 exon
chr4:80081267-80081359
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATCTGCCCCTCTTCCCACAGACT
3' ss Score
11.93
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CGCAGCAGTCTATCAAAGCAGAATTCATTTCCAGCTGGAAGCAATTTGTCATTTTCTTGTGGTGGGGACACACGAGTTCCATTCTGGCTACAGTCTTCAGAGGACATGGAAAAGTGCTCGAAAG
Seq A exon
ACTTGGCACACTGCCACACTTATCTGCTGGAGATGAGCCAGCTCTTAGAAAGCATGGACGTCTTGCATCGGACATACTCGGCGCCAGCTATCAACGCCATCCAG
Seq C2 exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAGCGCTCGCACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'12-16,'12-15,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCAGTCTATCAAAGCAGA
R:
CTGCAGCATTCCTTTAGCATCT
Band lengths:
217-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]