HsaEX6007526 @ hg38
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24806776-24870845:-
Coord C1 exon
chr7:24870732-24870845
Coord A exon
chr7:24863496-24863599
Coord C2 exon
chr7:24806776-24806902
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCTTTTCCCCCACAGACC
3' ss Score
13.87
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATAGAGAGAGAGAAGCTGCATGGCTGCATTGATGTCGGGCTCTCAGTGATGTCTGTAAAGAAGTCATCAAAATGCATAGACCTTGACACCGAGGAGCACATCTACCATCTGAAG
Seq A exon
ACCTGGCGCACTGTCATGCCTACCTGGTAGAAATGAGCCAGCTCCTGCAAAGCATGGACGTCCTGCATCGGACATACTCGGCACCAGCTATCAACGCCATCCAG
Seq C2 exon
ATCCTATGCCGAAAGGCTACGAGCAATACTATAGCTTCACACAGTTTGCGCTGGAATTAAATGAAATGGATCCATCATCAAAGTCTTTATTGCCACCTACTGACACTCGATTTAGGCCAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882_MULTIEX1-3/21=C1-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.186
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NO
C2:
PF0123713=Oxysterol_BP=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGAAGCTGCATGGCTG
R:
TCTGGTCTGGCCTAAATCGAGT
Band lengths:
235-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains