DreEX0052769 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21535229-21538090:+
Coord C1 exon
chr16:21535229-21535340
Coord A exon
chr16:21535436-21535539
Coord C2 exon
chr16:21537998-21538090
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTCTCTCTTTAAGAAC
3' ss Score
10.65
5' ss Seq
CAGGTTACA
5' ss Score
-1.25
Exon sequences
Seq C1 exon
CGTGCCTCTCTTGCAAAGCAGTCTTCTCTCCACTCACCTGCACCATTTACCAGCCAGGCCAAGGTGACCGCCTGGCTCCAGTCTTCAGACGACATGGACAGGTGCACCAAAG
Seq A exon
AACTGTCTGTATGCGAGGCTCAGTTGCTGGAACTGAATCACTTGTTAAGAAGTATGGAGGTGTTACACCGCACATACTCTGCCCCAGCAATCAACGCTCTGCAG
Seq C2 exon
GCTTCAACATATGACAGCCCAAAAAAAGAGAAGAGACATCCCAGAAAATGGCGCCCTAAGAATTATGGGAAAGACAACAAAACAACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTCTTGCAAAGCAGTCT
R:
CTGCAGGGTTGTTTTGTTGTCT
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]