BtaEX6027826 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71417552-71421778:+
Coord C1 exon
chr4:71417552-71417665
Coord A exon
chr4:71420910-71421077
Coord C2 exon
chr4:71421655-71421778
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTCGACCCAACACAATCTAGGTG
3' ss Score
4.38
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATAGAGAGAGAGAAGCTGCATGGCTGCATCGACGTCGGGCTCTCGGTGATGTCTGTGAAGAAATCATCCAAGTGCATAGACCTGGATACCGAGGAGCACATTTACCATCTGAAG
Seq A exon
GTGAAGTCAGAGGACGTCTTTGATGAGTGGGTATCCAAACTCCGCCACCACAGAATGTACCGTCAGAATGAAATCGCCATGTTTCCACACGAAGTTAATCATTTTTTCCCAGGATCTACAGTCCCAGACTCCGGTCCTGGAGTCATGGACACCATTTCAAGTAGGAAG
Seq C2 exon
CGTAGCAGTATATCAAAGCAGAATTCGTTTCAAACCGGAAGCAATTTATCATTTTCTTGTGGTGGTGAGACTCGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.119
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
PF154091=PH_8=PD(18.9=30.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGAGAAGCTGCATGGC
R:
TTTGGAGCATTTTTCCATGTCCT
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]