HsaEX6007524 @ hg19
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24904961-24910464:-
Coord C1 exon
chr7:24910351-24910464
Coord A exon
chr7:24905689-24905856
Coord C2 exon
chr7:24904961-24905084
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTCAATCGAATATATTATAGGTC
3' ss Score
6.32
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATAGAGAGAGAGAAGCTGCATGGCTGCATTGATGTCGGGCTCTCAGTGATGTCTGTAAAGAAGTCATCAAAATGCATAGACCTTGACACCGAGGAGCACATCTACCATCTGAAG
Seq A exon
GTCAAGTCAGAAGAAGTCTTTGATGAGTGGGTATCGAAACTTCGCCACCACAGAATGTATCGTCAGAATGAAATTGCCATGTTTCCACATGAAGTTAACCACTTTTTCTCAGGGTCCACCATCACAGACTCTTCATCTGGGGTGTTTGACTCCATTTCAAGTAGGAAG
Seq C2 exon
CGTAGCAGTATATCAAAGCAGAATTTATTTCAAACTGGAAGCAATGTATCATTTTCTTGTGGTGGTGAGACACGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
PF154091=PH_8=PD(18.9=30.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGAGAAGCTGCATGGC
R:
TTTGGAGCATTTTTCCATGTCCT
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)