DreEX6040575 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21524981-21535340:+
Coord C1 exon
chr16:21524981-21525094
Coord A exon
chr16:21528552-21528716
Coord C2 exon
chr16:21535229-21535340
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGGTCTCCTTGTGTTTTCAGATT
3' ss Score
10.5
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTTGAGAAAGGAAAGCTCCACGGCTGCATTGACGTTGGGCTGTCCGTCATGGCCATTAAGAAGAAAGCCAAGTGCATTGATCTGGACACTGAAGAAAACATTTATCACTTGAAG
Seq A exon
ATTAAATCCCAGGAGCTCTTTGATGAATGGGTCTCTAAGCTTCGTCACCACAGACTTTACAGGCAGAATGAGATCGCCATGTTCCCTCATGAGAAAGCGCTCTTCCACCCTCATTACCCCCTCACCTCCTCTCCCACGATACCTGACAGTCAGGCCATCAGAAAG
Seq C2 exon
CGTGCCTCTCTTGCAAAGCAGTCTTCTCTCCACTCACCTGCACCATTTACCAGCCAGGCCAAGGTGACCGCCTGGCTCCAGTCTTCAGACGACATGGACAGGTGCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.158
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
PF154091=PH_8=PD(18.9=30.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGAAAGGAAAGCTCCACG
R:
CTTTGGTGCACCTGTCCATGT
Band lengths:
226-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]