RnoEX6013586 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80084550-80089025:-
Coord C1 exon
chr4:80088912-80089025
Coord A exon
chr4:80085109-80085276
Coord C2 exon
chr4:80084550-80084673
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTAACGCCCTGCAGGTA
3' ss Score
9.88
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATTGAGAGAGAGAAGCTGCACGGCAGTATTGACGTGGGGCTCTCCGTGATGTCTGTGAAGAAGTCATCCAAATGTATAGACCTCGACACCGAGGAGCACATCTACCACCTGAAG
Seq A exon
GTAAAGTCAGAAGACGTCTTTGACGAGTGGGTGTCCAAGCTTCGTCACCACAGAATGTACCGGCAGAATGAGATCGCCATGTTTCCCCGGGATGTCAACCACTTTTTCCCAGGGTCCTCTGTCACAGACTCTGCTCCGGGAGTATTCGAGTCTGTTTCCAGTAGGAAG
Seq C2 exon
CGCAGCAGTCTATCAAAGCAGAATTCATTTCCAGCTGGAAGCAATTTGTCATTTTCTTGTGGTGGGGACACACGAGTTCCATTCTGGCTACAGTCTTCAGAGGACATGGAAAAGTGCTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.071
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
PF154091=PH_8=PD(18.9=30.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAGAGAGAAGCTGCACG
R:
TCGAGCACTTTTCCATGTCCT
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]