GgaEX0016514 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31605872-31610484:-
Coord C1 exon
chr2:31610371-31610484
Coord A exon
chr2:31609641-31609811
Coord C2 exon
chr2:31605872-31605998
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATATCTGAAATTTTGTGTAGGTG
3' ss Score
6.49
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
ATAGAGAGAGGGAAACTTCATGGCTGTATTGATGTTGGACTTTCTGTCATGTCTGTAAAGAAATCAACAAAATGTATAGATTTAGATACCGAAGAGCAGATATATCATCTGAAG
Seq A exon
GTGAAATCTCAGGAGCTGTTTGATGAATGGGTAGCAAAGCTTCGTCATCACAGAATGTATCGTCAGAATGAAATCTCCATGTTTCCTCATGACGTCAATAATCTTTTCTTCCCAGTATCTACTACTGTGGACTCTGGCCCTGGTCTGTGTGATTTGACTCCAAGTAGAAAG
Seq C2 exon
GCAGGAAGCTTGACCAAACAGAACTCTCTGTCAGCTGGTGGTAACTTGTCGTTTTCCTTTTCGAGTAATGAGTCCAGGATTCCATCTTGGCTACAGTCCTCTGAAGACATGGAAAAATGCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'3-10,'3-7,5-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
PF154091=PH_8=PD(18.9=29.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGAGGGAAACTTCATGGCT
R:
GAGCATTTTTCCATGTCTTCAGAGG
Band lengths:
234-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]