BtaEX6027986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77322852-77324127:+
Coord C1 exon
chr4:77322852-77323073
Coord A exon
chr4:77323169-77323314
Coord C2 exon
chr4:77324013-77324127
Length
146 bp
Sequences
Splice sites
3' ss Seq
GGCTTTTTGCCTCTCCCCAGGCA
3' ss Score
10.51
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGAAACATTGAGTTCGTGGAGCTGGAGAGCAACCTGGAGCAGGGGCGCCTGGCGGTGACCGAGGAAGTGCTGGTGGACCACGTGGCTGAGCTGACGGCCACACCCCGGGAGCTAGTGCTGCGCTGCCTACTAGCTCGCACCGTGGCCTCTGGAGGCAGGGAGGTCATTGAGAAGGGCCACACTGCAGCCGAGGCCAGCTATGCCCGGGATGCCTGTGCCAAG
Seq A exon
GCAGTGTACCAGCGACTATTTGAGTGGGTGGTGGACCGGATTAATCATGTCATGGAACCCCGGGACCGGGACCCCCGGCGTGACGGCAAGGACACAGTCATTGGTGTGCTGGACATCTATGGCTTTGAGGTGTTCCCCGTCAATAG
Seq C2 exon
CTTCGAGCAGTTCTGCATCAATTACTGTAATGAGAAGCTGCAGCAGCTCTTCATCCAGCTCATCCTGAAGCAGGAGCAGGAGGAATATGAGCGGGAGGGCATCGCCTGGCAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGTGCTGGTGGACCA
R:
ATTCCTCCTGCTCCTGCTTCA
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]