MmuEX6083885 @ mm10
Exon Skipping
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6514752-6516303:-
Coord C1 exon
chr11:6516079-6516303
Coord A exon
chr11:6515849-6515994
Coord C2 exon
chr11:6514752-6514922
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAAAACATGCTCTGCTCCAGGCG
3' ss Score
4.94
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAAACATCGAGTTTGTGGAGACAGAGGAAAATGGACCACAGAAAGGAGGCCTGGAAGTGGCTGATGAGGCCCTGGTAGGATATGTGGCCAAGCTGACAGCCACTCCCAGAGACCTTGTTCTGCGAACCCTGCTGGCTCGAACAGTGGCTTCAGGAGGCCGAGAAGTCATTGAGAAGAGCCACACCGTGGCTGAGGCCAGCTATGCCCGGGATGCCTGTGCAAAG
Seq A exon
GCGATGTACCAGCGACTGTTTGAGTGGGTTGTGAACAAGATCAATAGCATCATGGAACCCCGAAACCGAGACCCTCGGTGTGATGGCAAGGATACTGTCATTGGGGTGCTGGACATTTACGGCTTTGAGGTGTTCCCTGTCAACAG
Seq C2 exon
ATCGAGTACTTCAACAACGCTACCATTGTGGAACTTGTAGAGCAGCCCCACAGAGGCATCCTGGCTGTGTTAGATGAAGCCTGCAGCACGGCAGGCCCCATCACTGACCGAATCTTCCTGCAGACCCTGGACACACACCACCGCCACCACCCACACTATTCCAGCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.020 C2=0.053
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTAGGATATGTGGCCA
R:
CGTGCTGCAGGCTTCATCTAA
Band lengths:
245-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types