GgaEX7001686 @ galGal4
Exon Skipping
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4041216-4042426:+
Coord C1 exon
chr2:4041216-4041422
Coord A exon
chr2:4041496-4041641
Coord C2 exon
chr2:4042312-4042426
Length
146 bp
Sequences
Splice sites
3' ss Seq
CATGGTTCCCCTGTCCCCAGGCC
3' ss Score
10.77
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
GGCAACGTGCAGTTTGTGGCAGAGGGTGAGGTGGCGGCGCTGGAGGCAGTGGAGCAGCTGGCTGTGCTGGCCCAGCTGACAGGAACAACACCTGAGCAGCTCCGCCAGGCACTGCTGGCCCGCACCGTGGCCACGGGAGGCGGGGAGCTCATCGAGAAGGGCCACAGCCCCACCGAGGCTGCCTATGGCAGGGATGCCTGTGCCAAG
Seq A exon
GCCATATACGAGCGGCTCTTCGGATGGATCGTGGGGCGCATCAATGCCAGCATCACCGCACGTGGTTACGATGTCCGGCAGCATGGCAAGAGCACCGTCATTGGCGTCCTTGACATCTATGGCTTCGAGATCTTTGACACCAACAG
Seq C2 exon
CTTTGAACAGTTCTGCATCAACTACTGCAACGAGAAGCTGCAGCAGCTTTTCATCGAGCTCATCCTGAGGCAGGAGCAAGCGGAGTACCAGCGAGAGGGCATCACCTGGCAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.1=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGTGGCAGAGGGTGAG
R:
CTCGATGAAAAGCTGCTGCAG
Band lengths:
256-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]