RnoEX6043224 @ rn6
Exon Skipping
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86790472-86791791:-
Coord C1 exon
chr14:86791567-86791791
Coord A exon
chr14:86791334-86791479
Coord C2 exon
chr14:86790472-86790586
Length
146 bp
Sequences
Splice sites
3' ss Seq
AACACCGTGCTCTGCTCCAGGCA
3' ss Score
7.16
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAAACATCGAATTTGTGGAGACAGAGGAAAATGGACCACAGAAAGGAGGCCTGGAAGTGGCAGACGAGGCCCTGGTAGGATATGTGGCCAAGCTGACAGCCACCCCCAGCGACCTCGTTCTGCGAACCCTGCTGGCTCGTACAGTGGCTTCAGGGGGCCGAGAGGTCATTGAGAAGAGCCACACTGTGGCTGAGGCCAGCTATGCCCGGGACGCCTGTGCAAAG
Seq A exon
GCAATGTACCAGCGACTGTTTGAGTGGGTTGTGAACAAGATCAACAGCATCATGGAACCCCGGGACCGGGACCCTCGGCGTGATGGCAAGGACACTGTCATTGGGGTGCTGGACATCTACGGCTTTGAAGTATTCCCTGTCAACAG
Seq C2 exon
CTTTGAGCAGTTCTGTATCAACTACTGCAATGAGAAGCTCCAGCAGCTCTTTATCCAGCTGATTCTGAAGCAAGAGCAGGAGGAGTATGAGCGAGAAGGCATCACCTGGCAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTAGGATATGTGGCCA
R:
TCGCTCATACTCCTCCTGCTC
Band lengths:
249-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]