MmuEX6083885 @ mm9
Exon Skipping
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6415097-6416306:-
Coord C1 exon
chr11:6416082-6416306
Coord A exon
chr11:6415852-6415997
Coord C2 exon
chr11:6415097-6415211
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAAAACATGCTCTGCTCCAGGCG
3' ss Score
4.94
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAAACATCGAGTTTGTGGAGACAGAGGAAAATGGACCACAGAAAGGAGGCCTGGAAGTGGCTGATGAGGCCCTGGTAGGATATGTGGCCAAGCTGACAGCCACTCCCAGAGACCTTGTTCTGCGAACCCTGCTGGCTCGAACAGTGGCTTCAGGAGGCCGAGAAGTCATTGAGAAGAGCCACACCGTGGCTGAGGCCAGCTATGCCCGGGATGCCTGTGCAAAG
Seq A exon
GCGATGTACCAGCGACTGTTTGAGTGGGTTGTGAACAAGATCAATAGCATCATGGAACCCCGAAACCGAGACCCTCGGTGTGATGGCAAGGATACTGTCATTGGGGTGCTGGACATTTACGGCTTTGAGGTGTTCCCTGTCAACAG
Seq C2 exon
CTTTGAGCAGTTCTGCATCAACTACTGCAACGAGAAGCTGCAGCAGCTCTTTATCCAGCTTATCCTGAAGCAAGAGCAGGAGGAGTATGAGCGAGAGGGCATCGCCTGGCAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-'10-11,'10-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGGAGGCCTGGAAGT
R:
GCTGGATAAAGAGCTGCTGCA
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: