BtaEX6027987 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77321614-77323314:+
Coord C1 exon
chr4:77321614-77321733
Coord A exon
chr4:77322852-77323073
Coord C2 exon
chr4:77323169-77323314
Length
222 bp
Sequences
Splice sites
3' ss Seq
TGACGATTTACCATCACCAGGGA
3' ss Score
5.22
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTCCTGGACATCGATGAGAAGAGCCACCACCAGGCAGTGACGGAGGCCATGCGGGTGATCGGCTTCAGTCCTGAGGAGGTGGCCTCTGTGCACCGGATCCTGGCTGCTATACTGCACCTG
Seq A exon
GGAAACATTGAGTTCGTGGAGCTGGAGAGCAACCTGGAGCAGGGGCGCCTGGCGGTGACCGAGGAAGTGCTGGTGGACCACGTGGCTGAGCTGACGGCCACACCCCGGGAGCTAGTGCTGCGCTGCCTACTAGCTCGCACCGTGGCCTCTGGAGGCAGGGAGGTCATTGAGAAGGGCCACACTGCAGCCGAGGCCAGCTATGCCCGGGATGCCTGTGCCAAG
Seq C2 exon
GCAGTGTACCAGCGACTATTTGAGTGGGTGGTGGACCGGATTAATCATGTCATGGAACCCCGGGACCGGGACCCCCGGCGTGACGGCAAGGACACAGTCATTGGTGTGCTGGACATCTATGGCTTTGAGGTGTTCCCCGTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(10.8=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATCGATGAGAAGAGCC
R:
TTGACGGGGAACACCTCAAAG
Band lengths:
260-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]