GgaEX1038093 @ galGal4
Exon Skipping
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4040577-4041641:+
Coord C1 exon
chr2:4040577-4040693
Coord A exon
chr2:4041216-4041422
Coord C2 exon
chr2:4041496-4041641
Length
207 bp
Sequences
Splice sites
3' ss Seq
AATCACCACGATGTCCCCAGGGC
3' ss Score
5.81
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGGCGGTGACGATGCGCGTGGCTACCGGGCAGTGGAGGAGGCAATGGCAGTCATTGGCTTCACCCCAGAGGAGGTGGGCGCTGTGCAACGCATCCTGGCGGCCATCCTGCACCTG
Seq A exon
GGCAACGTGCAGTTTGTGGCAGAGGGTGAGGTGGCGGCGCTGGAGGCAGTGGAGCAGCTGGCTGTGCTGGCCCAGCTGACAGGAACAACACCTGAGCAGCTCCGCCAGGCACTGCTGGCCCGCACCGTGGCCACGGGAGGCGGGGAGCTCATCGAGAAGGGCCACAGCCCCACCGAGGCTGCCTATGGCAGGGATGCCTGTGCCAAG
Seq C2 exon
GCCATATACGAGCGGCTCTTCGGATGGATCGTGGGGCGCATCAATGCCAGCATCACCGCACGTGGTTACGATGTCCGGCAGCATGGCAAGAGCACCGTCATTGGCGTCCTTGACATCTATGGCTTCGAGATCTTTGACACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644-'7-12,'7-10,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(10.1=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGGGCAGTGGAGGAG
R:
TGGTGTCAAAGATCTCGAAGCC
Band lengths:
236-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]