MmuEX6083884 @ mm9
Exon Skipping
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6415852-6416867:-
Coord C1 exon
chr11:6416751-6416867
Coord A exon
chr11:6416082-6416306
Coord C2 exon
chr11:6415852-6415997
Length
225 bp
Sequences
Splice sites
3' ss Seq
CACGGACTCTTCATCACCAGGGA
3' ss Score
6.48
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCCTTGGACAGTGATGAGAAGAGCCACCAAGGAGTGATGGAGGCCATGAGGATCATCGGCTTCAGTCCTGACGAGGTGGAGTCCATCCATCGCATCCTTGCCGCCATATTACACCTG
Seq A exon
GGAAACATCGAGTTTGTGGAGACAGAGGAAAATGGACCACAGAAAGGAGGCCTGGAAGTGGCTGATGAGGCCCTGGTAGGATATGTGGCCAAGCTGACAGCCACTCCCAGAGACCTTGTTCTGCGAACCCTGCTGGCTCGAACAGTGGCTTCAGGAGGCCGAGAAGTCATTGAGAAGAGCCACACCGTGGCTGAGGCCAGCTATGCCCGGGATGCCTGTGCAAAG
Seq C2 exon
GCGATGTACCAGCGACTGTTTGAGTGGGTTGTGAACAAGATCAATAGCATCATGGAACCCCGAAACCGAGACCCTCGGTGTGATGGCAAGGATACTGTCATTGGGGTGCTGGACATTTACGGCTTTGAGGTGTTCCCTGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.067 C2=0.020
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(10.8=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGACAGTGATGAGAAGA
R:
GGGAACACCTCAAAGCCGTAA
Band lengths:
254-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: