RnoEX6043223 @ rn6
Exon Skipping
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86791334-86792339:-
Coord C1 exon
chr14:86792223-86792339
Coord A exon
chr14:86791567-86791791
Coord C2 exon
chr14:86791334-86791479
Length
225 bp
Sequences
Splice sites
3' ss Seq
CATGGTCCCTTCATCACCAGGGA
3' ss Score
8.65
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCCTTGGGTAGTGATGAGAAGAGCCACCAAGGAGTGATGGAGGCCATGAAGATTATCGGCTTCAGTCCCGAGGAGGTAGAATCCATCCATCGTATCCTAGCCGCCATATTGCACCTG
Seq A exon
GGAAACATCGAATTTGTGGAGACAGAGGAAAATGGACCACAGAAAGGAGGCCTGGAAGTGGCAGACGAGGCCCTGGTAGGATATGTGGCCAAGCTGACAGCCACCCCCAGCGACCTCGTTCTGCGAACCCTGCTGGCTCGTACAGTGGCTTCAGGGGGCCGAGAGGTCATTGAGAAGAGCCACACTGTGGCTGAGGCCAGCTATGCCCGGGACGCCTGTGCAAAG
Seq C2 exon
GCAATGTACCAGCGACTGTTTGAGTGGGTTGTGAACAAGATCAACAGCATCATGGAACCCCGGGACCGGGACCCTCGGCGTGATGGCAAGGACACTGTCATTGGGGTGCTGGACATCTACGGCTTTGAAGTATTCCCTGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.080 C2=0.122
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(10.8=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGGTAGTGATGAGAAGA
R:
TTGACAGGGAATACTTCAAAGCCG
Band lengths:
260-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]