DreEX6073087 @ danRer10
Exon Skipping
Gene
ENSDARG00000036104 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr19:25149513-25152933:-
Coord C1 exon
chr19:25152817-25152933
Coord A exon
chr19:25150442-25150648
Coord C2 exon
chr19:25149513-25149658
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGTGATGTTACTGTTTCAGGGT
3' ss Score
9.47
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GCATCCAATAATGACTCCCAATGTCATAAAGCTGTGATGGCAGCATTAAAGGTGATTGGCTTTACTGCTGAAGAAATCAGCTCCATCTACAAGACCCTCAGTACCATCCTACACCTG
Seq A exon
GGTAACCTTCAGTTTACGAGTGATGGCGAACATGTCGTGCTGGTTGGAGAAGACATGCTGAAAAACATTTCTGAGTTGACGTCCACAGAGCCTGAGAACACAAGAAAAGCATTGCTGTATCGCACAGTGGCTACTGGGGGTGGAGAGGTCATTGAAAAAGGACACAGCGAGCAGGAAGCTAGCTATGGAAGAGACGCTTTTGCCAAG
Seq C2 exon
GCTTTATATGAGAGGTTATTTGCATGGATTGTTGGTCGGATCAATGGCGTTATTGAAGTAAAAGACTACAATCCTGCCCTCCACGGGAAGAACACTGTTATTGGTGTGCTGGACATTTATGGCTTTGAGATCTTTGACAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036104-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(10.1=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCAATAATGACTCCCAATGT
R:
TGTTATTGTCAAAGATCTCAAAGCCA
Band lengths:
262-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]