BtaEX6028510 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93671971-93672658:-
Coord C1 exon
chr4:93672577-93672658
Coord A exon
chr4:93672165-93672317
Coord C2 exon
chr4:93671971-93672074
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCACACCACTGTAGTCT
3' ss Score
4.92
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCTGGTGAAGTCTCCTGCGAGGAGCGTGAGTGCCCAGGCATGCCCTGCACCCTGCCTGACTCTGGCCCCGAGCCCTGCTCAG
Seq A exon
TCTGCGTGCTTGATGAAGAGGAGTTTGCTGAGGGTGTCCAGTGGGAGCCTGATGGCCAGCCCTGCACGACCTGCTCCTGTCAAGCTGGGGTACCTGTGTGTGGGACTTTGCTCTGCTCCCCAGCCCCCTGCCAGCACCCCACCCAGCCCCCGG
Seq C2 exon
GTGCCTGCTGCCCCAGCTGTGAGAATTGCACTTACCATGGCCAAGTGTATGCCAACGGGCAGAACTTCACAGACGCAGACCCTTGCCACACCTGCCACTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'20-22,'20-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(87.7=96.2)
C2:
PF0009313=VWC=PD(10.5=17.1),PF0009313=VWC=PU(44.6=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGAAGTCTCCTGCGA
R:
CTCGCAGTGGCAGGTGTG
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]