RnoEX6012961 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56776183-56776802:-
Coord C1 exon
chr4:56776721-56776802
Coord A exon
chr4:56776360-56776512
Coord C2 exon
chr4:56776183-56776289
Length
153 bp
Sequences
Splice sites
3' ss Seq
GACAGATCTCCTTGCTGCAGCCT
3' ss Score
4.65
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCTGGTGAAGTATCCTGTGAGGAACAGGACTGCCCGGTCACCCCCTGTGTCCACACTGCCTCCGGCCCCCAGCTCTGCTCAG
Seq A exon
CCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTACCTGTTCCTGCCAAGACGGAGTGCCTGTGTGCAGGGCTGCACTTTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCGCCCG
Seq C2 exon
GTGCCTGCTGCCCCAGCTGTGAGAGCTGCACCTACCACGGCCTAGTGTATTCTAATGGGCAGAACTTCACAGATGTGGACAGCCCTTGTCAGACCTGCTACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'17-19,'17-18,19-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(47.3=92.9)
A:
PF0009313=VWC=PU(87.7=96.2)
C2:
PF0009313=VWC=PD(10.5=16.7),PF0009313=VWC=PU(45.6=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGAAGTATCCTGTGAGG
R:
CACAGTAGCAGGTCTGACAAGG
Band lengths:
187-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]