MmuEX6003370 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29447722-29448358:-
Coord C1 exon
chr6:29448277-29448358
Coord A exon
chr6:29447905-29448057
Coord C2 exon
chr6:29447722-29447828
Length
153 bp
Sequences
Splice sites
3' ss Seq
GACAGACTTCCTTGCTGCAGCCT
3' ss Score
4.76
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTGGTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCG
Seq A exon
CCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTTCCTGTTCCTGCCAAGATGGAGTGCCTGTGTGCAGGGCTGTGCTTTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCACCTG
Seq C2 exon
GTGCCTGCTGTCCCAGCTGTGATAGCTGCACCTACCACAGCCTGGTGTATGCTAATGGGCAGAACTTCACAGATGTGGACAGCCCTTGTCAGACCTGCTACTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'14-19,'14-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(47.3=92.9)
A:
PF0009313=VWC=PU(87.7=96.2)
C2:
PF0009313=VWC=PD(10.5=16.7),PF0009313=VWC=PU(45.6=72.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGAAGTATCCTGTGAAGA
R:
CGCAGTAGCAGGTCTGACAAG
Band lengths:
187-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: