MmuEX6003370 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29491665-29498358:-
Coord C1 exon
chr6:29498277-29498358
Coord A exon
chr6:29497905-29498057
Coord C2 exon
chr6:29491665-29491758
Length
153 bp
Sequences
Splice sites
3' ss Seq
GACAGACTTCCTTGCTGCAGCCT
3' ss Score
4.76
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTGGTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCCGGCCCCCAGCTCTGCTCCG
Seq A exon
CCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAGATGACCAGCCCTGTACTTCCTGTTCCTGCCAAGATGGAGTGCCTGTGTGCAGGGCTGTGCTTTGCTCTCCAGTACCCTGCCAACATCCTACCCAGCCACCTG
Seq C2 exon
GCCGGCCAGGTCAGCTGCACGAGGCTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCTCGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022_MULTIEX1-7/30=6-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(47.3=92.9)
A:
PF0009313=VWC=PU(87.7=96.2)
C2:
PF0009313=VWC=PD(50.9=90.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGAAGTATCCTGTGAAGA
R:
GTGCATCGAGGACAGCAGG
Band lengths:
174-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types