DreEX6064090 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6985953-6989678:-
Coord C1 exon
chr18:6989582-6989678
Coord A exon
chr18:6986353-6986493
Coord C2 exon
chr18:6985953-6986050
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTCTGTGTTTGTAGGTT
3' ss Score
9.52
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGGGGGAATGTAAGGTGTCACCAGGAAAGATGCCCACCTACTAATTGTCCAGTTCCTACTCCTGCGCCTCCTAACCAATGCTGCCCAGCGTGCAGAG
Seq A exon
GTTGTGTGTGGAATAACAATCAGTATGAGGAAGGATCCACATGGGCTGACGGTGAACAGATGTGTTCTTGTGTGGCAGGACAGGTGACGTGCCGTCTGAACTGTCCGACTCCTGAGTCCTGTCTGGAGCCCATAGTGACAG
Seq C2 exon
GTGGTGACTGTGGCCAGTGCCAATACGGAGAGTATGTGTATGAAAACGGCCAATCATTCCAGGACCCGCAGGATCCCTGTGTGACGTGCACCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.8=90.9)
A:
NO
C2:
PF0009313=VWC=PU(45.6=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAATGTAAGGTGTCACC
R:
CTGACAGGTGCACGTCAC
Band lengths:
194-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]