BtaEX6028511 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93668503-93670092:-
Coord C1 exon
chr4:93669904-93670092
Coord A exon
chr4:93669410-93669580
Coord C2 exon
chr4:93668503-93668679
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCTCTCACCTGTCCCACTAGGCT
3' ss Score
9.26
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTGCCCCCTCGGGCTGCCCCCGGCCAGGGGGCTTGGTCCCTGCCCACCACCAGGAGTACTTCTCCCCGCCCGACGACCCCTGCCGCCGCTGCCTCTGCCTGGACGGCTCGGTGTCCTGCCGGAGACTGCCCTGCCCTCCCGTGCCCTGCACCCACCCGCACCAGGGGCCCTGCTGCCCCTCCTGTGACG
Seq A exon
GCTGCCTGTACCAGGGGAAGGAGTTCACCAGCGGGGAGCGCTTCCCTTCGCCCACTGCCAGATGTCACATCTGCCTCTGCTGGGAGGGCAGCATCAGCTGTGAGCCCAGGGCCTGTGCACCTGCCCAGTGCCCCTTCCCTGCCCAGGGTGACTGCTGCCCTGCCTGTGATG
Seq C2 exon
GCTGTGAGTATCTGGGGGAGTCCTACCTGAGTGGCCAGGAGTTCCCAGATCCCCGCGAGCCCTGCAACCTGTGTACCTGCCTCGGAGGCTTCGTGACCTGCGGCCGCCGGCCCTGTGAGCCCCTGGGCTGCAGCCACCCACTCACCCGAGCTGGGCACTGCTGCCCGACCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'28-32,'28-30,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=79.7)
A:
PF0009313=VWC=WD(100=94.8)
C2:
PF0009313=VWC=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCACCAGGAGTACTTCT
R:
AGGTCACGAAGCCTCCGAG
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]