HsaEX7004434 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128888863-128891096:-
Coord C1 exon
chr7:128890905-128891096
Coord A exon
chr7:128890343-128890513
Coord C2 exon
chr7:128888863-128889039
Length
171 bp
Sequences
Splice sites
3' ss Seq
GCCCCTGCCCTTCTCCCCAGGCT
3' ss Score
10.98
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCGCCCCAGCCCCCGCCGGCTGCCCACGGCCCGGCGCGGCCCACGCCCGCCACCAGGAGTACTTCTCCCCGCCCGGCGATCCCTGCCGCCGCTGCCTCTGCCTCGACGGCTCCGTGTCCTGCCAGCGGCTGCCCTGCCCGCCCGCGCCCTGCGCGCACCCGCGCCAGGGGCCTTGCTGCCCCTCCTGCGACG
Seq A exon
GCTGCCTGTACCAGGGGAAGGAGTTTGCCAGCGGGGAGCGCTTCCCATCGCCCACTGCTGCCTGCCACCTCTGCCTTTGCTGGGAGGGCAGCGTGAGCTGCGAGCCCAAGGCATGTGCCCCTGCACTGTGCCCCTTCCCTGCCAGGGGCGACTGCTGCCCTGACTGTGATG
Seq C2 exon
GCTGTGAGTACCTGGGGGAGTCCTACCTGAGTAACCAGGAGTTCCCAGACCCCCGAGAACCCTGCAACCTGTGTACCTGTCTTGGAGGCTTCGTGACCTGCGGCCGCCGGCCCTGTGAGCCTCCGGGCTGCAGCCACCCACTCATCCCCTCTGGGCACTGCTGCCCGACCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-'30-34,'30-31,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=86.2)
A:
PF0009313=VWC=WD(100=94.8)
C2:
PF0009313=VWC=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCACCAGGAGTACTTCTC
R:
GTCACGAAGCCTCCAAGACAG
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains