MmuEX0025200 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29493189-29496349:-
Coord C1 exon
chr6:29496161-29496349
Coord A exon
chr6:29495758-29495928
Coord C2 exon
chr6:29493189-29493365
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCACTCCCCTTTCCCCCCAGGCT
3' ss Score
11.51
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ATGCCCCTGCTGACTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCGCTGCCTCTGCCTGGATGGCTCAGTGTCCTGCCAGCGGCTGACCTGCCCTCCTGCGCCCTGCGCCCACCCACGCCGGGACGCCTGTTGCCCCTCTTGCGACG
Seq A exon
GCTGCCTGTATCAGGGGAAGGAGTTTGCCAGTGGGGAGCGTTTTCCATCACCAAACGTTGCGTGCCACGTGTGCCTCTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGACTTGTGCCCCTGCACAGTGCCCCTTTCCCACCAGGGAAGACTGCTGCCCTGCCTGTGATA
Seq C2 exon
GCTGTGATTATCTTGGGGTCTCCTATCTGAGCAGCCAGGAGTTCCCAGACCCCCGGGAAGCCTGCAACCTATGCACCTGCCTTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'27-44,'27-41,28-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=89.1)
A:
PF0009313=VWC=WD(100=94.8)
C2:
PF0009313=VWC=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGGAGCACTTTTTCCA
R:
CAAGTCACGAAGCCTCCAAGG
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types