RnoEX0046269 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56771626-56774819:-
Coord C1 exon
chr4:56774631-56774819
Coord A exon
chr4:56774256-56774426
Coord C2 exon
chr4:56771626-56771802
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTCACTCCCCTTCCCCCTAGGCT
3' ss Score
11.21
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ATGCCCCTGCTGGCTGCCCACAGTCAGGGAATACGGTCCTTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCCTGCAGCCGCTGCCTCTGCCTGGACGGCTCCGTGTCCTGCCAGCGACTGCCCTGTCCTCCTGCTCCCTGTGCCCACCCGCGCCAGGGCGCCTGTTGCCCCTCTTGCGACG
Seq A exon
GCTGCCTGTATCATGGGAAGGAGTTTGCCAATGGAGAACGATTTCCATCACCTAGTGTCACGTGCCACGTGTGCCTCTGCTGGGAAGGCAGCGTCAACTGCGAGCCCAGGGCTTGTGCCCCTGCACAGTGCCCATTTCCCACCAGGGAAGATTGCTGTCCTGCCTGTGATA
Seq C2 exon
GCTGTGAGTATTTGGGGGTATCCTATCTGAACAGCCAGGAGTTCCCAGACCCCCGGGAAGCCTGCAACCTGTGCACCTGCCTTGGAGGCTTTGTGACTTGCACCCGCCGGCCCTGCGAGCCTCCAGCCTGCAGCCACCCACTCATCTTACCGAAGCACTGCTGTCCAACCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'25-28,'25-27,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=89.1)
A:
PF0009313=VWC=WD(100=94.8)
C2:
PF0009313=VWC=WD(100=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGGAGCACTTTTTCCA
R:
TGCAAGTCACAAAGCCTCCAA
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]