Special

MmuEX0025200 @ mm9

Exon Skipping

Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29443189-29446349:-
Coord C1 exon
chr6:29446161-29446349
Coord A exon
chr6:29445758-29445928
Coord C2 exon
chr6:29443189-29443365
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCACTCCCCTTTCCCCCCAGGCT
3' ss Score
11.51
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
ATGCCCCTGCTGACTGCCCACAGTCAGGGAATATGGTCCCTGTCCGCCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCGCTGCCTCTGCCTGGATGGCTCAGTGTCCTGCCAGCGGCTGACCTGCCCTCCTGCGCCCTGCGCCCACCCACGCCGGGACGCCTGTTGCCCCTCTTGCGACG
Seq A exon
GCTGCCTGTATCAGGGGAAGGAGTTTGCCAGTGGGGAGCGTTTTCCATCACCAAACGTTGCGTGCCACGTGTGCCTCTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGACTTGTGCCCCTGCACAGTGCCCCTTTCCCACCAGGGAAGACTGCTGCCCTGCCTGTGATA
Seq C2 exon
GCTGTGATTATCTTGGGGTCTCCTATCTGAGCAGCCAGGAGTTCCCAGACCCCCGGGAAGCCTGCAACCTATGCACCTGCCTTGGAGGCTTCGTGACTTGCACCCGCCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022_MULTIEX2-18/22=17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.016 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0009313=VWC=WD(100=89.1)

							
A:
PF0009313=VWC=WD(100=94.8)

							
C2:
PF0009313=VWC=WD(100=95.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000099135





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000077251, ENSMUSP00000088954, ENSMUSP00000088954f5103A, ENSMUSP00000124771
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:128890343-128890513 
HIGH PSI
HsaEX7004434
(KCP)
Human
(hg19)
chr7:128530397-128530567 
Rat
(rn6)
chr4:56774256-56774426 
ALTERNATIVE
RnoEX0046269
(Kcp)
Cow
(bosTau6)
chr4:93669410-93669580 
HIGH PSI
BtaEX6028511
(KCP)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr18:6979845-6980015 
HIGH PSI
DreEX6064096
(KCP)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCACCAGGAGCACTTTTTCCA

				
R: 
CAAGTCACGAAGCCTCCAAGG

				
Band lengths: 
243-414

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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