BtaEX6028897 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004263 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr4:103216556-103223255:-
Coord C1 exon
chr4:103223162-103223255
Coord A exon
chr4:103219245-103219363
Coord C2 exon
chr4:103216556-103216772
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTGTTTTCCTTCCAGATT
3' ss Score
11.85
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TATGCAGGTATTGAAAACGAATCCACTGTTGCAGCTCGACCCAGCCGTTCCGGGAGTATACTCTGGAAATCCATACCCGTTTGGAATTGATCCG
Seq A exon
ATTTGGAACTTGGCTTCAAACAAGCTAACATTTTTGAACTCCTATAAGATGAAGATGTCAGTTATCCTGGGAATTGTCCAGATGGTTTTTGGTGTTATTCTCAGCCTTTTCAATTACAG
Seq C2 exon
GTTCTTCAGAAACACTCTGAACATCATTCTGCAGTTCATCCCTGAGATGATTTTTATCCTGAGTCTTTTTGGATACCTGGTCTTCATGATCATCTTCAAATGGTGCTCCTTCGACGTCTCTGTGTCCCGGCGAGCCCCAAGCATCCTTATCCACTTCATTAACATGTTCCTATTTAACTACAAGGACTCTTCGAATGTACCTCTGTACCAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004263-'20-18,'20-17,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTATTGAAAACGAATCCAC
R:
GTGGATAAGGATGCTTGGGGC
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]