MmuEX0006895 @ mm9
Exon Skipping
Gene
ENSMUSG00000038600 | Atp6v0a4
Description
ATPase, H+ transporting, lysosomal V0 subunit A4 [Source:MGI Symbol;Acc:MGI:2153480]
Coordinates
chr6:38008725-38017830:-
Coord C1 exon
chr6:38017737-38017830
Coord A exon
chr6:38010970-38011088
Coord C2 exon
chr6:38008725-38008941
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTCACATTTCTTACCCAGATT
3' ss Score
6.59
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TACTCACATCGTGGAAAACAGTCCATATTTGCAGCTGGACCCAGCCATCCCAGGAGTGTATTCTGGGAATCCCTACCCATTTGGAATTGATCCG
Seq A exon
ATTTGGAACCTGGCTTCAAACAAGCTTACATTTTTAAACTCCTATAAGATGAAGATGTCAGTCATCCTGGGAATCGCTCATATGATTTTTGGTGTTATTCTCAGCCTCTTCAATCACAT
Seq C2 exon
TTACTTCAGAAGAACCCTCAACATCATTCTGCAATTCATTCCCGAGATGATTTTTATGCTGAGTCTGTTTGGATACCTGGTTTTCATGATCATTTTCAAGTGGTGCCGATATGATGCCCACACATCCCGGAAGGCTCCTAGCATCCTCATCCACTTTATCGGCATGTTTCTGTTCGACTACGATGACTCTTCCAACGCACCCCTGTATGGACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038600_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCATCCCAGGAGTGTAT
R:
GTGCGTTGGAAGAGTCATCGT
Band lengths:
254-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: